2026
D’Souza J, Auer S, Poupaki E, Watkins A, Devi A, Puurunen RL et al. Publishing FAIR and machine-actionable reviews in materials science: The case for symbolic knowledge in neuro-symbolic artificial intelligence. Journal of Vacuum Science and Technology A: Vacuum, Surfaces and Films. 2026 May;44(3):032408. Epub 2026 Apr 16. doi: 10.1116/6.0005226
Gaddipati SK, Keya F, Rabby G, Auer S. AIssistant: Human-AI Collaborative Review and Perspective Research Workflows in Data Science. In Wong RCW, Kwok J, Tong H, Lu H, Salim F, Song Y, Yiu ML, editors, Advances in Knowledge Discovery and Data Mining - 30th Pacific-Asia Conference on Knowledge Discovery and Data Mining, PAKDD 2026, Proceedings. Springer Science and Business Media Deutschland GmbH. 2026. p. 499-511. (Lecture Notes in Computer Science). doi: 10.1007/978-981-92-1468-6_35, 10.48550/arXiv.2509.12282
Iglesias E, Chaves-Fraga D, Auer S, Vidal ME. Normalization-driven optimization of knowledge graph creation for semantically grounded information fusion. Information Fusion. 2026 Oct;134:104337. Epub 2026 Apr 1. doi: 10.1016/j.inffus.2026.104337
John L, Ghanmi AM, Wittenborg T, Auer S, Karras O. ExtracTable: Human-in-the-Loop Transformation of Scientific Corpora into Structured Knowledge. In Balke WT, Golub K, Manolopoulos Y, Stefanidis K, Zhang Z, editors, Linking Theory and Practice of Digital Libraries: 29th International Conference on Theory and Practice of Digital Libraries, TPDL 2025, Proceedings. Springer Science and Business Media Deutschland GmbH. 2026. p. 470-487. (Lecture Notes in Computer Science). doi: 10.1007/978-3-032-05409-8_27, 10.48550/arXiv.2506.03221
Keya F, Auer S, Jaradeh MY. Neuro-Symbolic Federated Research Artifact Search. In Balke WT, Golub K, Manolopoulos Y, Stefanidis K, Zhang Z, editors, Linking Theory and Practice of Digital Libraries - 29th International Conference on Theory and Practice of Digital Libraries, TPDL 2025, Proceedings. Springer Science and Business Media Deutschland GmbH. 2026. p. 145-162. (Lecture Notes in Computer Science). doi: 10.1007/978-3-032-05409-8_10
Keya F, Rabby G, Auer S, Vahdati S, Mitra P, Jaradeh MY. SCI-IDEA: Context-Aware Scientific Ideation Using Token and Sentence Embeddings. Machine learning. 2026 Apr 22;115(5):103. doi: 10.1007/s10994-026-07036-8
Khalid M, Jaradeh MY, Auer S, Stocker M. Towards Context-Aware Search: Dynamic Facet Generation in Digital Libraries. In Acosta M, van Erp M, Rudolph S, Hartig O, Spahiu B, Rula A, Garijo D, Osborne F, editors, The Semantic Web - 23rd European Semantic Web Conference, ESWC 2026, Proceedings. Springer Science and Business Media Deutschland GmbH. 2026. p. 416-434. (Lecture Notes in Computer Science). doi: 10.1007/978-3-032-25159-6_22
Muhammed D, Tuccari GG, Rabby G, Auer S, Vahdati S. SelfCheck-Eval: A multi-module framework for zero-resource hallucination detection in large language models. Patterns. 2026 Jun 12;7(6):101569. Epub 2026 Jun 5. doi: 10.1016/j.patter.2026.101569
Rabby G, Muhammed D, Mitra P, Auer S. Iterative hypothesis generation for scientific discovery with Monte Carlo self-refining trees. Information sciences. 2026 Sept 25;751:123576. Epub 2026 May 2. doi: 10.1016/j.ins.2026.123576
Sadruddin S, Poupaki E, D’Souza J, Auer S, Watkins A, Karasulu B et al. Designing an agentic AI workflow for structured information extraction from scientific text: A case study on atomic layer deposition of ZnO and IGZO. Journal of Vacuum Science and Technology A: Vacuum, Surfaces and Films. 2026 Apr 30;44(3):032413. Epub 2026 Apr 30. doi: 10.1116/6.0005366
Sadruddin S, D’Souza J, Poupaki E, Watkins A, Karasulu B, Auer S et al. SCHEMA-MINERpro: Agentic AI for Ontology Grounding Over LLM-Discovered Scientific Schemas in a Human-in-the-Loop Workflow. Semantic web. 2026 May;17(3). Epub 2026 Apr 25. doi: 10.1177/22104968261431521
Stütz JD, Gegziabher S, Blaga V, Karras O, Oelen A, Auer S. DIVE - A Neuro-Symbolic and User-Centered Approach for Data Insight Visualization. In Awan I, Younas M, Zhang Y, Barhamgi M, Wang H, editors, Web Information Systems Engineering – WISE 2025 - 26th International Conference, Proceedings. Springer Science and Business Media Deutschland GmbH. 2026. p. 433-443. (Lecture Notes in Computer Science). doi: 10.1007/978-981-95-7251-9_29
2025
Auer S, Oelen A, Jaradeh MY, Khalid M, Keya F, Gaddipati SK et al. Towards AI-Supported Research: a Vision of the TIB AIssistant. In Scientific Knowledge: Representation, Discovery, and Assessment 2025: Proceedings of the 5th International Workshop on Scientific Knowledge: Representation, Discovery, and Assessment co-located with 24th International International Semantic Web Conference (ISWC 2025). 2025. p. 141-148. (CEUR Workshop Proceedings).
Babaei Giglou H, D’Souza J, Karras O, Auer S. OntoAligner: A Comprehensive Modular and Robust Python Toolkit for Ontology Alignment. In Curry E, Acosta M, Poveda-Villalón M, van Erp M, Ojo A, Hose K, Shimizu C, Lisena P, editors, The Semantic Web : 22nd European Semantic Web Conference, ESWC 2025, Proceedings. Springer Science and Business Media Deutschland GmbH. 2025. p. 174-191. (Lecture Notes in Computer Science). doi: 10.1007/978-3-031-94578-6_10, 10.48550/arXiv.2503.21902
Bikim JP, Atezong C, Jiomekong A, Oelen A, Rabby G, D’Souza J et al. Leveraging GPT Models For Semantic Table Annotation. In Semantic Web Challenge on Tabular Data to Knowledge Graph Matching 2024: Proceedings of the Semantic Web Challenge on Tabular Data to Knowledge Graph Matching. CEUR Workshop. 2025. p. 43-53. (CEUR workshop proceedings).
Haris M, Auer S, Stocker M. Managing Comprehensive Research Instrument Descriptions Within a Scholarly Knowledge Graph. In Oliver G, Frings-Hessami V, Du JT, Tezuka T, editors, Sustainability and Empowerment in the Context of Digital Libraries : 26th International Conference on Asia-Pacific Digital Libraries, ICADL 2024, Proceedings. Springer Science and Business Media Deutschland GmbH. 2025. p. 39-53. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). Epub 2024 Dec 6. doi: 10.1007/978-981-96-0868-3_3
Jaradeh MY, Auer S. Deep Research in the Era of Agentic AI: Requirements and Limitations for Scholarly Research. In Scientific Knowledge: Representation, Discovery, and Assessment 2025: Proceedings of the 5th International Workshop on Scientific Knowledge: Representation, Discovery, and Assessment co-located with 24th International International Semantic Web Conference (ISWC 2025). 2025. p. 149-157. (CEUR Workshop Proceedings).
Jordan M, Lanza G, Schönhals S, Auer S. The Semantic SI Ontology: Engineering, Alignment, and Validation of a Semantic SI Model. In Coenen F, Nolle L, Aveiro D, Fernandez-Breis J, Masciari E, Gruenwald L, Bernardino J, Torres R, editors, 17th International Conference on Knowledge Engineering and Ontology Development, KEOD 2025 and 17th International Conference on Knowledge Management and Information Systems, KMIS 2025 as part of IC3K 2025 - Proceedings of the 17th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management. Science and Technology Publications, Lda. 2025. p. 28-39. (International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, IC3K - Proceedings). doi: 10.5220/0013707600004000
Keya F, Jaradeh MY, Auer S. Leveraging LLMs for Scientific Abstract Summarization: Unearthing the Essence of Research in a Single Sentence. In Wu J, Hu X, Nurmikko-Fuller T, Chu S, Yang R, Downie JS, editors, JCDL 2024 - Proceedings of the 24th ACM/IEEE Joint Conference on Digital Libraries. Institute of Electrical and Electronics Engineers Inc. 2025. 9. (Proceedings of the ACM/IEEE Joint Conference on Digital Libraries). doi: 10.1145/3677389.3702588
Nejdl W, Auer S. WSDM 2025 General Chairs' Welcome. In WSDM 2025 : Proceedings of the 18th ACM International Conference on Web Search and Data Mining. 2025. p. iii
